I just uploaded all of the upload files excluding the ones noted. And now I cannot access my webstore I get this ERROR:

MySQL Error Occured
1146: Table 'nirvcom_ccrt1.CubeCart_cats_lang' doesn't exist

QUERY = SELECT cat_master_id as cat_id, cat_name FROM CubeCart_cats_lang WHERE cat_lang = 'en'



Does anyone know how I can fix this?

Did you run the upgrade.php file? As this file adds a new table to the mysql database. CubeCart_cats_lang.