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It's inclusive of the managed support plans. https://www.cubecart.com/technical-support

Yes we can do that for you and make sure the PHP configuration is compatible (ZipArchive, mbstring etc)... Done this many, many, many times. Look forward to working with you soon.

I think its quite a convoluted way. If we did this for you on the managed support plan we would; Take a full backup. "Diff" against the same version to pull out an exact report of code changes. Apply these code changes to 6.2.14. Upgrade using the customised package. I've done this many times. It's very time consuming but we do it at no extra cost to a regular upgrade. 6.0.6 has security holes so hopefully they have been patched. If not then you need to check that it hasn't been hacked. If it has then it needs to be cleansed. There is a support article about how to do that. A classic hacked store may be running code snippets you don't know about. These can be viewed in the "Manage Hooks" section in the "Code Snippets" tab.

skip step 3. just pick up the files/db, port to new server. update globals file with new DB details, delete root .htaccess file and you should be online. then pick up from step 6

The 'top menu' is the "Navigation" bar (or sometimes "Shop by Category" box). The menu is built from all the categories (enabled and unhidden) there are. There are also three special items: Home, Sale Items, and Gift Certificates. To add any other links to this group would require editing the skin template "box.navigation.php".